What now?

You know the old joke about the dog that's always chasing cars and then one day he catches one?  Now what's he gonna do with it?  That's me with this motorcycle. Now what?  I don't know if I ever really expected I'd get her torn down, put back together, and running or not but here I am...and there it is. 
By the way the juke box (zune) was playing random songs when she started and the song that just happened to be playing was, Joe Ely "The Road Goes On Forever."

I edited this video...cut the first 5 minutes or so out..  Didn't think it would be too interesting watching me try to start it, scratch my head, try to start it, scratch my ass, try to start it fiddle with something on the left side that you couldn't see from the camera angle over and over for five minutes so I edited it.
The spark plug wire on the left cylinder is not in very good shape and not making good connection.  That is the primary reason it wouldn't start at first.

Once it started every time the engine kind of paused it made a funny noise.  It didn't really sound quite the same on the video, at least I didn't think so...does that noise sound bad?
I let it die at the end because I noticed that it was starting to smoke.  It's not real visible but if you watch carefully you can notice about 2 minutes into the video there is some smoke coming up by my right leg.  It appeared to be coming from or around the pre-chamber between the pipes.  Maybe just normal from solvents burning off or a symptom of something bad?
If anyone has any ideas about the noise or the smoke, speak up please, I'm looking for advice.